| Protein |
protein structure class for rFold |
| Chain |
protein chain class for rFold |
| Residue |
residue structure classes for rFold |
| Dihedron |
dihedron structure class for rFold |
| Hedron |
hedron structure class for rFold
a hedron consists of 3 coplanar objects, specified as two bond lengths and the angle between them. |
| geom3d |
3D geometry module : rotation,transformation matrix generation and manipulation |
| parsers |
file parsers:
command line parser, PDB file / (modified) DSSP output parser |
| utils |
utility functions:
modified extended string:match(); atom token,hedron and dihedron key manipulators
not a class but works better with ldoc if we say it is |